PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6AS_967D58FB4.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 1135aa    MW: 126076 Da    PI: 6.3236
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6AS_967D58FB4.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.32.6e-22132233199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F
  Traes_6AS_967D58FB4.1 132 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIF 218
                            99******************************9999986.************************************************ PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               ++++++l+++++r+
  Traes_6AS_967D58FB4.1 219 V--RDEKQQLLLGIRRA 233
                            *..5688889****997 PP

2Auxin_resp114.97.4e-38258341183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ ete+  +rr++Gt++g+sdldpvrW+nS+WrsL+
  Traes_6AS_967D58FB4.1 258 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 341
                            799********************************989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-41121261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-39124247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.32E-18131223No hitNo description
PROSITE profilePS5086311.448132234IPR003340B3 DNA binding domain
PfamPF023623.6E-20132233IPR003340B3 DNA binding domain
SMARTSM010191.1E-21132234IPR003340B3 DNA binding domain
PfamPF065077.0E-33258341IPR010525Auxin response factor
PfamPF023094.3E-89991087IPR033389AUX/IAA domain
PROSITE profilePS5174526.94710021086IPR000270PB1 domain
SuperFamilySSF542772.84E-610161081No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1135 aa     Download sequence    Send to blast
MAQSPASSAV AASAPCEGER KAPAINGELW HACAGPLVSL PPVGSLVVYF PQGHSEQVAA  60
SMQKDVEAHV PSYPNLPSKL ICLLHSVTLQ ADPDTDEVYA QMTLQPVNTY AKEALQLSEL  120
ALRQARPQME FFCKTLTASD TSTHGGFSVP RRAAEKIFPS LDFSLQPPCQ ELQARDIHDN  180
VWTFRHIFRG QPKRHLLTTG WSLFVSGKKL FAGDSVIFVR DEKQQLLLGI RRANRQPTNI  240
SSSVLSSDSM HIGVLAAAAH ASANTSPFTI FYNPRASPTE FVIPFAKYQK AMYSNQISLG  300
MRFRMMCETE ELGTRRYMGT ITGISDLDPV RWKNSQWRSL QVGWDESAAG ERRNRVSIWE  360
IEPLAAPFFI CPQPFFGVKR PRQLDDESLE MESLMKRAMP WLGEEVCIKD PQTQSATMPG  420
LSLVQWMNMN RQQSSSLAST AMQSEYLRSA SNPAMQNIGA ADLARQLYMQ NHLLQQNSMQ  480
FNPPKLHQQM KPINDLSNAA LPLNQLSAIR NHQDQKQDQQ RQQQSSIQAI PLSQAQAQTN  540
IVQAQVILQN QMQQQQQQKQ PPPSPTQNQH GASGQHLLQS HQLQDQNLQM QQQQLLLHQQ  600
LQQQQQQQQL NKLPGQLANL ASQQTQLSDQ ELHLQLLQKL QQQSLMSQSA VTLSRLPIIQ  660
EQQNFLVDMQ QQLSNSHSLA QQQVMPQQDC RTSSLQTTQL PPPIQQEQQQ QQQQKPSQKQ  720
VAPTYVSEAA FAQISSTSVI PKTGNATIVP GAAQSAVTEE IPSCSTSPST ANGNHLAQPT  780
IGRNDHCKTS TEKVPHSIAQ MSILIPIEAV SVTPVTTKEL PKLNNGVKSS AITSKLPNVV  840
SGLQNFMNNA LPTDNLETAS SATSLWPSQT DGLLHQGFAT SNFNQHQMFK DELPDVEIQG  900
VDPSNSALFG MNNDGPLGFP METEGLLENA LDSVKYQNHF STDDENNYQM QKDARQEIST  960
SMVSQSFGQS DMAFNSIDSA INDGALMNRS SWPPAAPPQR MRTFTKVYKR GAVGRSIDIG  1020
RFSGYGELNQ ALARMFGIEG QLEDRQRIGW KLVYTDHEDD VLLLGDDPWE EFVNCVKCIR  1080
ILSPQEVQKM SLDGDLGSNV LPNQACSSSD GGNTWKPRYE QNSGNPSIGP YDQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631836245388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570905.10.0PREDICTED: auxin response factor 5-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLW5GF220.0W5GF22_WHEAT; Auxin response factor
STRINGMLOC_73144.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]